2017

Maximiliano J. Amenabar, Everett L. Shock, Eric E. Roden, John W. Peters, & Eric S. Boyd. Microbial substrate preference dictated by energy demand rather than supply. Nature Geoscience. July, 2017. doi:10.1038/ngeo2978

Sara Branco, Hélène Badouina, Ricardo C. Rodríguez de la Vegaa, Jérôme Gouzyb, Fantin Carpentiera,Gabriela Aguiletaa, Sophie Siguenzab, Jean-Tristan Brandenburga, Marco A. Coelhoc, Michael E. Hoodd, and Tatiana Girauda.  Evolutionary strata on young mating-type chromosomes despite the lack of sexual antagonism. PNAS. May, 2017. doi:10.1073/pnas.1701658114

Kezia R. Manlove, E. Frances Cassirer, Raina K. Plowright, Paul C. Cross, Peter J. Hudson. Contact and contagion: Probability of transmission given contact varies with demographic state in bighorn sheep. Journal of Animal Ecology. May, 2017. DOI: 10.1111/1365-2656.12664.

E. Percak-Dennett, S. He, B. Converse, H. Konishi, H. Xu, A. Corcoran, D. Noguera, C. Chan, A. Bhattacharyya, T. Borch, Eric Boyd, E. E. Roden. Microbial acceleration of aerobic pyrite oxidation at circumneutral pH. Geobiology. April, 2017. DOI: 10.1111/gbi.12241

 Christina L. Faust, Andrew P. Dobson, Nicole Gottdenker, Laura S. P. Bloomfield, Hamish I. McCallum, Thomas R. Gillespie, Maria Diuk-Wasser, Raina K. Plowright. Null expectations for disease dynamics in shrinking habitat: dilution or amplification?. Philosophical Transactions of the Royal Society B-Biological Sciences. April, 2017. DOI: 10.1098/rstb.2016.0173. 

Saikat Chowdhury, Joshua Carter, MaryClare F. Rollins, Sarah M. Golden, Ryan N. Jackson, Connor Hoffman, Lyn'Al Nosaka, Joseph Bondy-Denomy, Karen L. Maxwell, Alan R. Davidson, Elizabeth R. Fischer, Gabriel C. Lander, Blake Wiedenheft. Structure Reveals Mechanisms of Viral Suppressors that Intercept a CRISPR RNA-Guided Surveillance Complex. Cell. March 2017. DOI: https://doi.org/10.1016/j.cell.2017.03.012. 

 Anthony R. Flores, Randall J. Olsen, Concepcion Cantu, Kyler B. Pallister, Fermin E. Guerra, Jovanka M. Voyich, James M. Musser. Increased pilus production conferred by a naturally occurring mutation alters host-pathogen interaction in favor of carriage in Streptococcus pyogenes. Infection and Immunity. March 2017. doi: 10.1128/IAI.00949-16. 

Eric S. Boyd, Ri-Qing Yu, Tamar Barkay, Trinity L. Hamilton, Bonnie K. Baxter, David L. Naftz, Mark Marvin-DiPasquale. Effect of salinity on mercury methylating benthic microbes and their activities in Great Salt Lake, Utah. March 2017.  https://doi.org/10.1016/j.scitotenv.2016.12.157. 

Ping Zhang, Zhili He, Joy D. Van Nostrand, Yujia Qin, Ye Deng, Liyou Wu, Qichao Tu, Jianjun Wang, Christopher W. Schadt, Matthew W. Fields, Terry C. Hazen, Adam P. Arkin, David A. Stahl, Jizhong Zhou. Dynamic Succession of Groundwater Sulfate-Reducing Communities during Prolonged Reduction of Uranium in a Contaminated Aquifer. Environmental Science & Technology. March, 2017. DOI: 10.1021/acs.est.6b02980.

Ninuo Xia, Fang Fang, Pengbo Zhang, Jun Cui, Chhavy Tep-Cullison, Tim Hamerley, Hyun Joo Lee, Theo Palmer, Brian Bothner, Jin Hyung Lee, and Renee Reijo Pera. A Knockin Reporter Allows Purification and Characterization of mDA Neurons from Heterogeneous Populations. Science Direct, Cell Report. March 2017. https://doi.org/10.1016/j.celrep.2017.02.023.

Gulmira Oezek, Igor A. Shepetkin, Gulzhakhan A. Utegenova, Liliya N. Kirpotina, Spencer R. Andrei, Temel Oezek, Kemal Husnu Can Baser, Karime T. Abidkulova, Svetlana V. Kushnarenko, Andrei I. Khlebnikov, Derek S. Damron, Mark T. Quinn. Chemical composition and phagocyte immunomodulatory activity of Ferula iliensis essential oils. Journal of Leukocyte Biology. March, 2017. doi: 10.1189/jlb.3A1216-518RR. 

John Gilmer, Tanner Harding, Linda Woods, Brad Black, Raja Flores, Jean Pfau. Mesothelial cell autoantibodies upregulate transcription factors associated with fibrosis. Inhalation Toxicology. February, 2017. http://dx.doi.org/10.1080/08958378.2016.1271841. 

Elliott P. Barnharta, Katherine J. Davis, Matthew Varonka, William Orem, Alfred B. Cunningham, Bradley D. Ramsay, Matthew W. Fields. Enhanced coal-dependent methanogenesis coupled with algal biofuels: Potential water recycle and carbon capture. Science Direct, Elsevier, International Journal of Coal Geology. February 2017. https://doi.org/10.1016/j.coal.2017.01.001

Rosana S. Molina, Robert E. Campbell, Nathan C. Shaner, Thomas E. Hughes, Mikhail Drobizhev. New GFP Variants with Enhanced Two-Photon Brightness. Science Direct, Biophysical Journal. February 2017. https://doi.org/10.1016/j.bpj.2016.11.1540

Saikat Chowdhury, MaryClare F. Rollins, Joshua Carter, Ryan Jackson, Lyn‘Al Nosaka, Blake Wiedenheft, Gabriel C. Lander. Using Cryoem to Understand How Phages Evade Bacterial CRISPR Defense System. Science Direct, Biophysical Journal. February 2017. https://doi.org/10.1016/j.bpj.2016.11.1811.

Tatsuya Akiyama, Kerry S. Williamson, Robert Shaefer, Shawna Pratt, Connie B. Chang, Michael J. Franklin. Resuscitation of Pseudomonas aeruginosa from dormancy requires hibernation promoting factor (PA4463) for ribosome preservation. Proceedings of the National Academy of Sciences. February 2017. doi: 10.1073/pnas.1700695114. 

David J. Paez, Julian J. Dodson. Environment-specific heritabilities and maternal effects for body size, morphology and survival in juvenile Atlantic salmon (Salmo salar): evidence from a field experiment. Environmental Biology of Fishes. January 2017. DOI: 10.1007/s10641-016-0572-z.

Andrew J. King, Sarah P. Preheim, Kathryn L. Bailey, Michael S. RobesonII , Taniya Roy Chowdhury, Bryan R. Crable, Richard A. HurtJr., Tonia Mehlhorn, Kenneth A. Lowe, Tommy J. Phelps, Anthony V. Palumbo, Craig C. Brandt, Steven D. Brown, Mircea Podar, Ping Zhang, W. Andrew Lancaster, Farris Poole, David B. Watson, Matthew W. Fields, John-Marc Chandonia, Eric J. Alm, Jizhong Zhou, Michael W. W. Adams, Terry C. Hazen, Adam P. Arkin, and Dwayne A. Elias. Temporal Dynamics of In-Field Bioreactor Populations Reflect the Groundwater System and Respond Predictably to Perturbation. ACS Publications, Environmental Science and Technology. January 2017. DOI: 10.1021/acs.est.6b04751

Marta Chaverra, Lynn George, Marc Mergy, Hannah Waller, Katharine Kujawa, Connor Murnion, Ezekiel Sharples, Julian Thorne, Nathaniel Podgajny, Andrea Grindeland, Yumi Ueki, Steven Eiger, Cassie Cusick, A. Michael Babcock, George A. Carlson, Frances Lefcort. The familial dysautonomia disease gene IKBKAP is required in the developing and adult mouse central nervous system. January, 2017. doi: 10.1242/dmm.028258.

Mandi M. Roe, Steve Swain, T. Andrew Sebrell, Marisa A. Sewell, Madison M. Collins, Brian A. Perrino, Phillip D. Smith , Lesley E. Smythies and Diane Bimczok. Differential regulation of CD103 (αE integrin) expression in human dendritic cells by retinoic acid and Toll-like receptor ligands. Journal of Leukocyte Biology. January, 2017. doi: 10.1189/jlb.1MA0316-131R. 

Blake Wiedenheft and Joseph Bondy-Denomy. CRISPR control of virulence in Pseudomonas aeruginosa. International Journal of Oral Science. January, 2017. doi:10.1038/cr.2017.6.

Gerardo Martin, Rebecca J Webb, Carla Chen, Raina K Plowright, Lee F Skerratt. Microclimates Might Limit Indirect Spillover of the Bat Borne Zoonotic Hendra Virus. Microbial Ecology. January 2017. DOI: 10.1007/s00248-017-0934-x. 

2016

Monika D Scuron, Kathleen Boesze-Battaglia, Mensur Dlakic, Bruce J Shenker. The Cytolethal Distending Toxin Contributes to Microbial Virulence and Disease Pathogenesis by Acting as a Tri-Perditious Toxin. Frontiers in Cellular and Infection Microbiology. December 2016. doi: 10.3389/fcimb.2016.00168. 

Jamie C. DeWitt, Brenda J. Buck, Dirk Goossens, c, Yuanxin Teng, James Pollard, Brett T. McLaurin, Russell Gerads, Deborah E. Keil. Health effects following subacute exposure to geogenic dust collected from active drainage surfaces (Nellis Dunes Recreation Area, Las Vegas, NV).Science Direct. December 2016. DOI: http://dx.doi.org/10.1016/j.toxrep.2016.12.002.

Wenchao Feng, Dylan Minor, Mengyao Liu, Jinquan Lia, , Suzanne L. Ishaq, Carl Yeoman and Benfang Lei. Null Mutations of Group A Streptococcus Orphan Kinase RocA: Selection in Mouse Infection and Comparison with CovS Mutations in Alteration of in vitro and in vivo Protease SpeB Expression and Virulence. American Society for Microbiology, Infection and Immunity. December, 2016. DOI: 10.1128/IAI.00790-16. 

Gerardo A. Martin, Carlos Yanez-Arenas, Billie J. Roberts, Carla Chen, Raina K. Plowright, Rebecca J. Webb, Lee F. Skerratt. Climatic suitability influences species specific abundance patterns of Australian flying foxes and risk of Hendra virus spillover. Elsevier, One Health. December, 2016. DOI: http://dx.doi.org/10.1016/j.onehlt.2016.07.004.

C. Hwang,A. Copeland, S. Lucas,A. Lapidus,K. Barry,J. C. Detter,T. Glavina del Rio, N. Hammon,S. Israni,E. Dalin,H. Tice,S. Pitluck,O. Chertkov,T. Brettin, D. Bruce,C. Han, J. Schmutz,. Larimer,M. L. Land,L. Hauser,N. Kyrpides,N. Mikhailova, Q. Ye, J. Zhou, P. Richardson, M. W. Fields. Complete Genome Sequence of Alkaliphilus metalliredigens Strain QYMF, an Alkaliphilic and Metal-Reducing Bacterium Isolated from Borax-Contaminated Leachate Ponds. American Society for Microbiology, Genome Announcements. November, 2016. doi: 10.1128/genomeA.01226-16.

Joshua Carter, Connor Hoffman, Blake Wiedenheft. The Interfaces of Genetic Conflict Are Hot Spots for Innovation. November, 2016. https://doi.org/10.1016/j.cell.2016.12.007.

Stefan F Ehrentraut, Valerie F Curtis, Ruth X Wang, Bejan J Saeedi, Heidi Ehrentraut, Joseph C Onyiah, Caleb J Kelly, Eric L Campbell, Louise E Glover, Douglas J Kominsky, Sean P Colgan. Perturbation of neddylation-dependent NF-κB responses in the intestinal epithelium drives apoptosis and inhibits resolution of mucosal inflammation. Biosynthesis and Biodegradation. November 2016. doi:10.1091/mbc.E16-05-0273.

Benjamin Schwarz, Kaitlyn M Morabito, Tracy J Ruckwardt, Dustin P Patterson, John Avera, Heini M Miettinen, Barney S Graham, Trevor Douglas. Viruslike Particles Encapsidating Respiratory Syncytial Virus M and M2 Proteins Induce Robust T-Cell Responses. ACS Biomaterials Science and Engineering. November 2016. DOI: 10.1021/acsbiomaterials.6b00532. 

Claudia Vergelli, Igor A. Schepetkin, Giovanna Ciciani, Agostino Cilibrizzi, Letizia Crocetti, Maria Paola Giovannoni, Gabriella Guerrini, Antonella Iacovone, Liliya N. Kirpotina, Richard D. Ye, Mark T. Quinn. Synthesis of Five- and Six-Membered N-Phenylacetamido Substituted Heterocycles as Formyl Peptide Receptor Agonists. BJCP-Adverse Drug Reactions. November 2016. DOI: 10.1002/ddr.21370

Jaime Szeinuk, Curtis W. Noonan, Claudia I. Henschke, Jean Pfau, Brad Black, Albert Miller, David F. Yankelevitz, Mingzhu Liang, Ying Liu, Rowena Yip, Laura Linker, Tracy McNew, Raja M. Flores. Pulmonary abnormalities as a result of exposure to Libby amphibole during childhood and adolescence—The Pre-Adult Latency Study (PALS). November 2016. DOI: 10.1002/ajim.22674

Monika Tokmina-Lukaszewska, Zunji Shi, Brian Tripet, Timothy R McDermott, Valerie Copie, Brian Bothner, Gejiao Wang. Metabolic response of Agrobacterium tumefaciens 5A to arsenite. Environmental Microbiology. November 2016. DOI: 10.1111/1462-2920.13615

L.H. Hodgskiss, b, J. Nagy, E.P. Barnhart, A.B. Cunningham, M.W. Fields. Cultivation of a native alga for biomass and biofuel accumulation in coal bed methane production water. Elsevier, Algal Research. November, 2016. DOI: http://dx.doi.org/10.1016/j.algal.2016.07.014.

Klára Vlčková, Andres Gomez, Klára J. Petrželková, Christopher A. Whittier, Angelique F. Todd, Carl J. Yeoman, Karen E. Nelson, Brenda A. Wilson, Rebecca M. Stumpf, David Modrý, Bryan A. White, Steven R. Leigh. Effect of Antibiotic Treatment on the Gastrointestinal Microbiome of Free-Ranging Western Lowland Gorillas (Gorilla g. gorilla). Microbial Ecology. November, 2016. DOI: 10.1007/s00248-016-0745-5. 

Gill G. Geesey, Tamar Barkay and Sue King. Microbes in mercury-enriched geothermal springs in western North America. Science of the Total Environment. Volumes 569-570, November 2016, Pages 321-331. http://dx.doi.org/10.1016/j.scitotenv.2016.06.080.

Rachel J. VanKempen-Frylinga, Anne K. Camper. Escherichia coli O157:H7 attachment and persistence within root biofilm of common treatment wetlands plants. Elsevier,Ecological Engineering. October, 2016. DOI: http://dx.doi.org/10.1016/j.ecoleng.2016.10.018

Xiqiu Han, Logan Schultz, Weiyan Zhang, Jihao Zhu, Fanxu Meng, Gill G. Geesey. Mineral formation during bacterial sulfate reduction in the presence of different electron donors and carbon sources. Chemical Geology. Volume 435, October 2016, Pages 49-59. doi:10.1016/j.chemgeo.2016.04.022.

Tyler K. Nygaard, Scott D. Kobayashi, Brett Freedman, Adeline R. Porter, Jovanka M. Voyich, Michael Otto, Olaf Schneewind, Frank R. DeLeo. Interaction of Staphylococci with Human Bcells. PLOs One. October 2016. doi:10.1371/journal.pone.0164410

Heidi R. Schoen, Brent M. Peyton and W. Berk Knighton. Rapid total volatile organic carbonquantification from microbial fermentationusing a platinum catalyst and proton transferreactionmass spectrometry. Springer Open. October 2016. DOI 10.1186/s13568-016-0264-2.

Tyler K. Nygaard, Scott D. Kobayashi, Brett Freedman, Adeline R. Porter, Jovanka M. Voyich, Michael Otto, Olaf Schneewind, Frank R. DeLeo. Interaction of Staphylococci with Human B cells. PLOS-One. October 2016. doi:10.1371/journal.pone.0164410.

 Vadim N. Gladyshev, Elias S. Arnér, Marla J. Berry, Regina Brigelius-Flohé, Elspeth A. Bruford, Raymond F. Burk, Bradley A. Carlson, Sergi Castellano, Laurent Chavatte, Marcus Conrad, Paul R. Copeland, Alan M. Diamond, Donna M. Driscoll, Ana Ferreiro, Leopold Flohéq, Fiona R. Green, Roderic Guigót, Diane E. Handy, Dolph L. Hatfield, John Hesketh, Peter R. Hoffmann, Arne Holmgren, Robert J. Hondal, Michael T. Howard, Kaixun Huang, Hwa-Young Kim, Ick Young Kim, Josef Köhrle, Alain Krol, Gregory V. Kryukov, Byeong Jae Lee, Byung Cheon Lee, Xin Gen Lei, Qiong Liu, Alain Lescure, Alexei V. Lobanov, Joseph Loscalzo, Matilde Maiorinor, Marco Mariottia, K. Sandeep Prabhu, Margaret P. Rayman, Sharon Rozovskyoo, Gustavo Salinas, Edward E. Schmidt, Lutz Schomburg, Ulrich Schweizer, Miljan Simonović, Roger A. Sunde, Petra A. Tsuji, Susan Tweedie, Fulvio Ursinir, Philip D. Whanger and Yan Zhang. Selenoprotein Gene Nomenclature. Journal of Biological Chemistry. September, 2016. doi: 10.1074/jbc.M116.756155

E. Frances Cassirer, Kezia R. Manlove, Raina K. Plowright, Thomas E. Besser. Evidence for strain-specific immunity to pneumonia in bighorn sheep. Wiley Online Library, Wildlife Management. September, 2016. DOI: 10.1002/jwmg.21172.  

Cody J Zabransky, David G Hewitt, Randy W Deyoung, Shawn S Gray, Calvin Richardson, Andrea R Litt, Charles A Deyoung. A Detection Probability Model for Aerial Surverys of Mile Deer. Journal of Wildlife Management. September 2016. DOI: 10.1002/jwmg.21143

Kezia Manlove, E. Frances Cassirer, Paul C. Cross, Raina K. Plowright, Peter J. Hudson.Disease introduction is associated with a phase transition in bighorn sheep demographics. Ecology- Ecological Society of America.September 2016. DOI: 10.1002/ecy.1520

John R. Giles, Raina K. Plowright, Peggy Eby, Alison J. Peel, Hamish McCallum. Models of Eucalypt phenology predict bat population flux. Ecology of Evolution. September 2016. DOI: 10.1002/ece3.2382

Xinghong Yang, Beata Clapp, Theresa Thornburg, Carol Hoffman, David W. Pascual. Vaccination with a ΔnorD ΔznuA Brucella abortus mutant confers potent protection against virulent challenge. Elservier- Vaccine. September 2016. http://dx.doi.org/10.1016/j.vaccine.2016.09.004

 Deborah E. Keil, Brenda Buck, Dirk Goossens, Yuanxin Teng, James Pollard, Brett McLaurin, Russell Gerads, Jamie DeWitt. Health effects from exposure to atmospheric mineral dust near Las Vegas, NV, USA. Elsevier, Toxicology Reports. September, 2016. DOI: http://dx.doi.org/10.1016/j.toxrep.2016.09.009

Saroj Poudel,  Monika Tokmina-Lukaszewska, Daniel R. Colman, Mohammed Refai, Gerrit J. Schut, Paul W. King, Pin-Ching Maness,  Michael W.W. Adams, John W. Peters,  Brian Bothner, Eric S. Boyd. Unification of [FeFe]-hydrogenases into three structural and functional groups. Biochimica et Biophysica Acta (BBA) - General Subjects. Volume 1860, Issue 9, September 2016, Pages 1910-1921. doi:10.1016/j.bbagen.2016.05.034. 

Igor A. Schepetkin, Svetlana V. Kushnarenko, Gulmira Özek, Liliya N. Kirpotina, Pritam SinharoyΔ, Gulzhakhan A. Utegenova, Karime T. Abidkulova, Temel Özek, Kemal Hüsnü Can Başer, Anastasia R. Kovrizhina, Andrei I. Khlebnikov, Derek S. Damron, and Mark T. Quinn. Modulation of Human Neutrophil Responses by the Essential Oils from Ferula akitschkensis and Their Constituents. Journal of Agricultural and Food Chemistry.September 2, 2016. DOI:10.1021/acs.jafc.6b03205.

 Wenchao Feng, Mengyao Liu, Daniel G. Chen, Rossana Yiu, Ferric C. Fang, Benfang Lei.Contemporary Pharyngeal and Invasive emm1 and Invasive emm12 Group A Streptococcus Isolates Exhibit Similar In Vivo Selection for CovRS Mutants in Mice. PLOS ONE. September 2016. doi: 10.1371/journal.pone.0162742

J. Rafael Montenegro-Burke, Thiery Phommavongsay, Aries E. Aisporna, Tao Huan, Duane Rinehart, Erica Forsberg, Farris L. Poole, Michael P. Thorgersen, Michael W. W. Adams, Gregory Krantz, Matthew W. Fields, Trent R. Northen, Paul D. Robbins, Laura J. Niedernhofer, Luke Lairson, H. Paul Benton, and Gary Siuzdak. Smartphone Analytics: Mobilizing the Lab into the Cloud for Omic-Scale Analyses. Analytical Chemistry. August, 2016. DOI: 10.1021/acs.analchem.6b02676.

Ameya A. Mashruwala, Shiven Bhatt, Saroj Poudel, Eric S. Boyd, Jeffrey M. Boyd. The DUF59 Containing Protein SufT Is Involved in the Maturation of Iron-Sulfur (FeS) Proteins during Conditions of High FeS Cofactor Demand in Staphylococcus aureus. PLOS, Genetics. August, 2016.  DOI: http://dx.doi.org/10.1371/journal.pgen.1006233. 

Breana Pabst, Betsey Pitts, Ellen Lauchnor and Philip S. Stewart. Gel-Entrapped Staphylococcus aureus Bacteria as Models of Biofilm Infection Exhibit Growth in Dense Aggregates, Oxygen Limitation, Antibiotic Tolerance, and Heterogeneous Gene Expression. American Society for Microbiology, Antimicrobial Agents and Chemotherapy. August, 2016. DOI: 10.1128/AAC.01336-16. 

Stephen R. Parker, Robert F. West, Eric S. Boyd, Jayme Feyhl-Buska, Christopher H. Gammons, Tyler B. Johnston, Simon R. Poulson. Biogeochemical and microbial seasonal dynamics between water column and sediment processes in a productive mountain lake: Georgetown Lake, MT, USA. Journal of Geophysical Research, Biogeosciences. August, 2016. DOI: 10.1002/2015JG003309.

Jayme Feyhl-Buska, Yufei Chen, Chengling Jia, Jin-Xiang Wang, Chuanlun L. Zhang and Eric S. Boyd. Influence of Growth Phase, pH, and Temperature on the Abundance and Composition of Tetraether Lipids in the Thermoacidophile Picrophilus torridus. Frontiers in Microbiology. August, 2016. DOI: 10.3389/fmicb.2016.01323.

Pilar Manrique, Benjamin Bolduc, Seth T. Walk, John van der Oost, Willem M. de Vos, and Mark J. Young. Healthy human gut phageome. PNAS. August 29, 2016. doi: 10.1073/pnas.1601060113

Laura M. Brutscher, Alexander J. McMenamin, Michelle L. Flenniken. The Buzz about Honey Bee Viruses. PLOS Pathogens. August 2016. doi:10.1371/journal.ppat.1005757. 

Luis O. De Serrano, Anne K. Camper, and Abigail M. Richards. An overview of siderophores for iron acquisition in microorganisms living in the extreme. BioMetals. August 2016, Volume 29, Issue 4, pp 551–571. doi:10.1007/s10534-016-9949-x.

Kathleen Boesze-Battaglia, Desiree Alexander, Mensur Dlakic, and Bruce J. Shenker. A Journey of Cytolethal Distending Toxins through Cell Membranes. Frontiers in Cellular and Infection Microbiology. August 2016. http://dx.doi.org/10.3389/fcimb.2016.00081.

Alexander J McMenamin, Laura M Brutscher, William Glenny, and Michelle L Flenniken. Abiotic and biotic factors affecting the replication and pathogenicity of bee viruses. Current Opinion in Insect Science. Volume 16, August 2016, Pages 14-21. doi:10.1016/j.cois.2016.04.009.

Raina K. Plowright , Alison J. Peel, Daniel G. Streicker, Amy T. Gilbert, Hamish McCallum, James Wood, Michelle L. Baker, Olivier Restif. Transmission or Within-Host Dynamics Driving Pulses of Zoonotic Viruses in Reservoir–Host Populations. PLOS Neglected Tropical Diseases. August 2016. DOI: 10.1371/journal.pntd.0004796.s001.

Alayna K. Caffrey and Joshua J. Obar. Alarmin(g) the innate immune system to invasive fungal infections. Current Opinion in Microbiology. Volume 32, August 2016, Pages 135-143. http://dx.doi.org/10.1016/j.mib.2016.06.002.

Jamie DeWitt, Brenda Buck, Dirk Goossens, Qing Hu, Rebecca Chow, Winnie David, Sharon Young, Yuanxin Teng, Mallory Leetham-Spencer, Lacey Murphy, James Pollard, Brett McLaurin, Russell Gerads and Deborah Keil. Health effects following subacute exposure to geogenic dusts from arsenic-rich sediment at the Nellis Dunes Recreation Area, Las Vegas, NV. Toxicology and Applied Pharmacology. Volume 304, August 2016, Pages 79-89. doi:10.1016/j.taap.2016.05.017.

Kristopher A. Hunt, Ryan deM. Jennings,William P. Inskeep and Ross P. Carlson. Stoichiometric modelling of assimilatory and dissimilatory biomass utilisation in a microbial community. Environmental Microbiology. August 2016. DOI: 10.1111/1462-2920.13444

S. Courtney Frasch, Eóin N. McNamee, Douglas Kominsky, Paul Jedlicka, Claudia Jakubzick, Karin Zemski Berry, Matthias Mack, Glenn T. Furuta, James J. Lee, Peter M. Henson, Sean P. Colgan and Donna L. Bratton. G2A Signaling Dampens Colitic Inflammation via Production of IFN-γ. The Journal of Immunology. July, 2016. DOI: 10.4049/​jimmunol.1600264. 

M. R. Lindsay, C. Anderson, N. Fox, G. Scofield, J. Allen, E. Anderson, L. Bueter, S. Poudel, K. Sutherland,J. H. Munson-McGee, J. D. Van Nostrand, J. Zhou, J. R. Spear, B. K. Baxter, D. R. Lageson, E. S. Boyd. Microbialite response to an anthropogenic salinity gradient in Great Salt Lake, Utah. Geobiology. 14 July 2016. DOI: 10.1111/gbi.12201

 Letizia Crocetti, Igor A. Schepetkin, Giovanna Ciciani, Maria Paola Giovannoni, Gabriella Guerrini, Antonella Iacovone, Andrei I. Khlebnikov, Liliya N. Kirpotina, Mark T. Quinn and Claudia Vergelli. Synthesis and Pharmacological Evaluation of IndoleDerivatives as Deaza Analogues of Potent HumanNeutrophil Elastase Inhibitors. Wiley Online Library. July 2016. DOI: 10.1002/ddr.21323. 

Aixian Lan, Wenjun Li, Yao Liu, Zhaohui Xiong, Xinyan Zhang, Shanshan Zhou, Olesya Palko, Hao Chen, Mayanga Kapita, Justin R. Prigge, Edward E. Schmidt, Xin Chen, Zheng Sun, Xiaoxin Luke Chen. Chemoprevention of oxidative stress-associated oral carcinogenesis by sulforaphane depends on NRF2 and the isothiocyanate moiety. Oncotarget. July 2016. DOI: 10.18632/oncotarget.10609. 

Fermin E. Guerra, Conrad B. Addison, Nienke W. M. de Jong, Joseph Azzolino, Kyler B. Pallister, Jos (A. G.) van Strijp and Jovanka M. Voyich. Staphylococcus aureus SaeR/S-regulated factors reduce human neutrophil reactive oxygen species production. Journal of Leukocyte Biology.  June, 2016. DOI: 10.1189/jlb.4VMAB0316-100RR. 

Colman, D.R., J. Feyhl-Buska, K.J. Robinson, K.M. Fecteau, H. Xu, E.L. Shock,and E.S. BoydEcological differentiation in planktonic and sediment-associated chemotrophic microbial communities in Yellowstone hot springs. FEMS Microb. Ecol. In press.

Lindsay, M.R., C. Anderson, N. Fox, G. Scofield, J. Allen,E. Anderson, L. Bueter, S. Poudel, K. Sutherland, J.H. Munson-McGee, J. Van Norstrand, J. Zhou, J.R. Spear, B.K. Baxter, D.R. Lageson, and E.S. Boyd. 2016. Microbialite response to an anthropogenic salinity gradient in Great Salt Lake, Utah. Geobiology.  In press.

Shefah Qazi, Heini M. Miettinen, Royce A. Wilkinson, Kimberly McCoy, Trevor Douglas, and Blake Wiedenheft. Programmed Self-Assembly of an Active P22-Cas9 Nanocarrier System. ACS Publications: Molecular Pharmaceutics. 2016, 13 (3), pp 1191–1196. DOI: 10.1021/acs.molpharmaceut.5b00822.

Daniel J. Kao, Jordi M. Lanis, Erica Alexeev and Douglas J. Kominsky. HPLC-Based Metabolomic Analysis of Normal and Inflamed Gut. Gastrointestinal Physiology and Diseases. Volume 1422, June 2016. DOI 10.1007/978-1-4939-3603-8_7. 

Daniel J. Kao, Jordi M. Lanis, Erica Alexeev and Douglas J. Kominsky. NMR-Based Metabolomic Analysis of Normal and Inflamed Gut. Gastrointestinal Physiology and Diseases. Volume 1422, June 2016. DOI 10.1007/978-1-4939-3603-8_8.

Yoon-Suk Kang, Keenan Brame, Jonathan Jetter, Brian B. Bothner, Gejiao Wang, Saravanamuthu Thiyagarajan and Timothy R. McDermott. Regulatory Activities of Four ArsR Proteins in Agrobacterium tumefaciens 5A. Applies and Environmental Microbiology. June 2016, Vol. 82, no. 12. doi: 10.1128/AEM.00262-16. 

Jodi F. Hedges, Amanda Robison, Emily Kimmel, Kelly Christensen, Erin Lucas, Andrew Ramstead and Mark A. Jutila. Type I Interferon Counters or Promotes Coxiella burnetii Replication Dependent on Tissue. Infection and Immunity. June 2016, vol. 84, no. 6. doi:10.1128/IAI.01540-15.

Claudia Vergelli, Igor A. Schepetkin, Giovanna Ciciani, Agostino Cilibrizzi, Letizia Crocetti, Maria Paola Giovannoni, Gabriella Guerrini, Antonella Iacovone, Liliya N. Kirpotina, Andrei I. Khlebnikov, Richard D. Ye, and Mark T. Quinn. 2-Arylacetamido-4-phenylamino-5-substituted pyridazinones as formyl peptide receptors agonists. Bioorganic & Medicinal Chemistry. Volume 24, Issue 11, 1 June 2016, Pages 2530–2543. doi:10.1016/j.bmc.2016.04.019

E Huarte, SangMu Jun, Agnieszka Rynda-Apple, Sara Golden, Larissa Jackiw, Carol Hoffman, Massimo Maddaloni, David W. Pascual. Regulatory T Cell Dysfunction Acquiesces to BTLA+ Regulatory B Cells Subsequent to Oral Intervention in Experimental Autoimmune Encephalomyelitis. The Journal of Immunology. June 2016. doi: 10.4049/jimmunol.1501973

Igor A. Schepetkin, Andrew G. Ramstead, Liliya N. Kirpotina, Jovanka M. Voyich, Mark A. Jutila, Mark T. Quinn. Therapeutic Potential of Polyphenols from Epilobium Angustifolium (Fireweed). Phytotherapy Research. May 2016. DOI: 10.1002/ptr.5648.

Kelly M. Shepardson, Kyle Larson, Rachelle V. Morton, Justin R. Prigge, Edward E. Schmidt, Victor C. Huber, Agnieszka Rynda-Apple. Differential Type I Interferon Signaling Is a Master Regulator of Susceptibility to Postinfluenza Bacterial Superinfection. mBio. May 2016, Volume 7, no. 3. doi: 10.1128/mBio.00506-16.

Ross P. Carlson, Olusegun Oshota, Matt Shipman, Justin A. Caserta, Ping Hu, Charles W. Saunders, Jun Xu, Zackary J. Jay, Nancy Reeder, Abigail Richards, Charles Pettigrew, Brent M. Peyton. Integrated molecular, physiological and in silico characterization of two Halomonas isolates from industrial brine. Extremophiles. May 2016, Volume 20, Issue 3, pp 261–274. DOI: 10.1007/s00792-015-0806-6. 

Michelle L. Luo, Ryan N. Jackson, Steven R. Denny, Monika Tokmina-Lukaszewska, Kenneth R. Maksimchuk, Wayne Lin, Brian Bothner, Blake Wiedenheft and Chase L. Beisel. The CRISPR RNA-guided surveillance complex in Escherichia coli accommodates extended RNA spacers. Nucleic Acids Research. May 2016. doi: 10.1093/nar/gkw421.

Sean P. Colgan, Eric L. Campbell and Douglas J. Kominsky. Hypoxia and Mucosal Inflammation. Annual Review of Pathology: Mechanisms of Disease. Volume 11, May 2016, Pages 77-100. DOI: 10.1146/annurev-pathol-012615-044231.

Elliott P. Barnhart, Edwin P. Weeks, Elizabeth J.P. Jones, Daniel J. Ritter, Jennifer C. McIntosh, Arthur C. Clark, Leslie F. Ruppert, Alfred B. Cunningham, David S. Vinson, William Orem, Matthew W. FieldsHydrogeochemistry and coal-associated bacterial populations from a methanogenic coal bedInternational Journal of Coal Geology. Volume 162, May 2016, Pages 14-26. doi:10.1016/j.coal.2016.05.001.

Philipp Engel,Waldan K. Kwong,Quinn McFrederick,Kirk E. Anderson,Seth Michael Barribeau,James Angus Chandler,R. Scott Cornman,Jacques Dainat,Joachim R. de Miranda,Vincent Doublet, Olivier Emery,Jay D. Evans,Laurent Farinelli,Michelle L. Flenniken,Fredrik Granberg,Juris A. Grasis,Laurent Gauthier,Juliette Hayer,  Hauke Koch, Sarah Kocher,Vincent G. Martinson,Nancy Moran,Monica Munoz-Torres,Irene Newton,Robert J. Paxton,Eli Powell,Ben M. Sadd,Paul Schmid-Hempel,Regula Schmid-Hempel,Se Jin Song,Ryan S. Schwarz,Dennis vanEngelsdorp,Benjamin Dainat. The Bee Microbiome: Impact on Bee Health and Model for Evolution and Ecology of Host-Microbe Interactions. American Society for Microbiology MBIO. April 2016. doi:10.1128/mBio.02164-15. 

John W Peters, Anne-Frances Miller, Anne K Jones, Paul W King and Michael WW Adams. Electron bifurcationCurrent Opinion in Chemical Biology. Volume 31, April 2016, Pages 146-152. doi:10.1016/j.cbpa.2016.03.007.

Naomi Tanaka, Danah Ashour, Edward Dratz, and Sandra Halonen. Use of human induced pluripotent stem cell-derived neurons as a model for Cerebral Toxoplasmosis. Microbes and Infection. 12 April 2016. doi:10.1016/j.micinf.2016.03.012

James C. Harms, Sunil Rangarajan, Carlton J. Young, Jill Barker-Finkel, and Michael Allon. Outcomes of arteriovenous fistulas and grafts with or without intervention before successful use. Journal of Vascular Surgery. 8 April 2016. doi:10.1016/j.jvs.2016.02.033.

Dmitriy N. Atochin, Igor A. Schepetkin, Andrei I. Khlebnikov, Victor I. Seledtsov,  Helen Swanson,  Mark T. Quinn, and Paul L. Huanga. A novel dual NO-donating oxime and c-Jun N-terminal kinase inhibitor protects against cerebral ischemia–reperfusion injury in mice. Neuroscience Letters. Volume 618, 8 April 2016, Pages 45–49. doi:10.1016/j.neulet.2016.02.033

Criddle, T. Thornburg, I. Kochetkova, M. DePartee, M. P. Taylor, and R. M. Sandri-Goldin. gD-Independent Superinfection Exclusion of Alphaherpesviruses. Journal of Virology. April 2016, vol. 90, no. 8. doi:10.1128/JVI.00089-16.

R. S. Hindshaw, S. Q. Lang, S. M. Bernasconi, T. H. E. Heaton, M. R. Lindsay, E. S. Boyd. Origin and temporal variability of unusually low δ13C-DOC values in two High Arctic catchments. Journal of Geophysical Research, Biogeosciences. April 2016. DOI: 10.1002/2015JG003303. 

Stephen R Lindemann, Hans C Bernstein, Hyun-Seob Song, Jim K Fredrickson, Matthew W Fields, Wenying Shou, David R Johnson and Alexander S Beliaev. Engineering microbial consortia for controllable outputs. The ISME Journal. March 2016. DOI:10.1038/ismej.2016.26

Lorenzo Di Cesare Mannelli, Laura Micheli, Lorenzo Cinci, Mario Maresca, Claudia Vergelli, Alessandra Pacini, Mark T. Quinn, Maria Paola Giovannoni, and Carla Ghelardini. Effects of the neutrophil elastase inhibitor EL-17 in rat adjuvant-induced arthritis. Rheumatology. March 2016. doi:10.1093/rheumatology/kew055. 

Matthew R. Urschel, Trinity L. Hamilton, Eric E. Roden, Eric S. Boyd.Substrate preference, uptake kinetics and bioenergetics in a facultatively autotrophic, thermoacidophilic crenarchaeote. FEMS Microbiology Ecology. March 2016. DOI: http://dx.doi.org/10.1093/femsec/fiw069

Ian Cavigli, Katie F. Daughenbaugh, Madison Martin, Michael Lerch, Katie Banner, Emma Garcia, Laura Brutscher, Michelle L. Flenniken.Pathogen prevalence and abundance in honey bee colonies involved in almond pollination. Apidologie. March 2016, Volume 47, Issue 2, pp 251–266. DOI: 10.1007/s13592-015-0395-5. 

Jodi F. Hedges, Jeff Holderness, Mark A. Jutila. Adjuvant materials that enhance bovine γδ T cell responses. Veterinary Immunology and Immunopathology. 17 March 2016. doi:10.1016/j.vetimm.2016.03.010

James Moberly, Seth D'Imperio, Albert Parker, and Brent Peyton. Microbial community signature in Lake Coeur d’Alene: Association of environmental variables and toxic heavy metal phases. Applied Geochemistry. Volume 66, March 2016, Pages 174–183. doi:10.1016/j.apgeochem.2015.12.013

Fortney, N.W., B.J. Converse, S. He, B.L. Beard, C.M. Johnson, E.S. Boyd, and E.E. Roden. 2016.  Microbial Fe(III) oxide reduction potential in Chocolate Pots, Yellowstone National Park.  Geobiol. In press.  doi: 10.1111/gbi.12173.

Harrold, Z., M.L. Skidmore, T.L. Hamilton, L. Desch,  K. Amada, W. van Gelder, K. Glover, E.E. Roden, and E.S. Boyd. 2016. Aerobic and anaerobic thiosulfate oxidation by a cold-adapted, subglacial chemoautotroph.  Appl. Environ. Microbiol. 82: 1486-1495. doi:10.1128/AEM.03398-15.  

Hochstein, R., M.J. Amenabar, J. Munson-McGee, E.S. Boyd, and M. Young. 2016. Acidianus tailed spindle virus: a new large tailed spindle virus discovered by culture-independent methods.  J. Virology. In press. 10.1128/JVI.03098-15.

Schut, G.J., O.A. Zadvornyy, J.W. Peters, E.S. Boyd, and M.W.W. Adams. 2016. The role of geochemistry and energetics in the evolution of modern respiratory complexes from a proton-reducing ancestor.  Biochem. Biophys. Acta-Bioenergetics.  In press.  doi:10.1016/j.bbabio.2016.01.010.

Hindshaw, R.S., S.Q. Lang, M.R. Lindsay, and E.S. Boyd. 2016. Origin and temporal variability of unusually low δ13C DOC values in two high arctic catchments.  J. Geol. Res. – Biogeosci.  In press. doi:10.1002/2015JG003303.

Druschel, G., G. Dick, and E. Boyd. 2016. 2014 Geomicrobiology and Geochemistry Workshop Report.  doi: 10.6084/m9.figshare.3083524. 

Urschel, M.R., T.L. Hamilton, E.E. Roden, and E.S. Boyd. 2016. Substrate preference, uptake kinetics, and energetics in a facultatively autotrophic, thermoacidiphilic crenarchaeote. FEMS Microb. Ecol. 92. fiw069. doi: 10.1093/femsec/fiw069.  

Poudel, S., M. Tokmina-Lukaszewska, D.R. Colman, M. Refai, G.J. Schut, P.W. King, P.-C. Maness, M.W.W. Adams, J.W. Peters, B. Bothner and E.S. Boyd. Unification of [FeFe]-hydrogenases into three structural and functional groups. Biochem. Biophys. Acta.  In press. doi:10.1016/j.bbagen.2016.05.034.  

Jose Ignacio Moncayo, Jenna Samara Luligo Espinal, Jorge Javier Santacruz Ibarra, Adalucy Álvarez Aldana. Relationship between super antigenicity, antimicrobial resistance and origin of staphylococcus aureus isolated. Columbia Médica. February 2016, volume 47, no. 1. 

Jordane Despres, Evelyne Forano, Pascale Lepercq, Sophie Comtet-Marre, Grégory Jubelin, Carl J. Yeoman, Margret E. Berg Miller, Christopher J. Fields, Nicolas Terrapon, Carine Le Bourvellec, Catherine M.G.C. Renard, Bernard Henrissat, Bryan A. White and Pascale Mosoni. Unraveling the pectinolytic function of Bacteroides xylanisolvens using a RNA-seq approach and mutagenesis. BMC Genomics. February 2016. DOI: 10.1186/s12864-016-2472-1. 

Jinjun Kan, Scott Clingenpeel, Charles L. Dow, Timothy R. McDermott, Richard E. Macur, William P. Inskeep and Kenneth H. Nealson. Geochemistry and Mixing Drive the Spatial Distribution of Free-Living Archaea and Bacteria in Yellowstone Lake. Frontiers in Microbiology. February 2016.  doi: 10.3389/fmicb.2016.00210.

Robert P. Hayes, Yibei Xiao, Fran Ding, Paul B. G. van Erp, Kanagalaghatta Rajashankar, Scott Bailey, Blake Wiedenheft, Ailong Ke. Structural basis for promiscuous PAM recognition in type I–E Cascade from E. coli. Nature. 25 February 2016. DOI: 10.1038/nature16995.

Melanie C. Melendrez, Eric D. Becraft, Jason M. Wood, Millie T. Olson, Donald A. Bryant, John F. Heidelberg, Douglas B. Rusch, Frederick M. Cohan, David M. WardRecombination Does Not Hinder Formation or Detection of Ecological Species of Synechococcus Inhabiting a Hot Spring Cyanobacterial MatFrontiers in Microbiology. 14 January 2016. DOI: 0.3389/fmicb.2015.01540. 

Heidi J. Smith, Christine M. Foreman, Tatsuya Akiyama, Michael J. Franklin, Nicolas P. Devitt, Thiruvarangan Ramaraj. Genome Sequence of Janthinobacterium sp. CG23_2, a Violacein-Producing Isolate from an Antarctic Supraglacial StreamGenome Announcements. January/February 2016, Volume 4, Number 1. DOI: 10.1128/genomeA.01468-15.

Zoë R. Harrold, Mark L. Skidmore, Trinity L. Hamilton, Libby Desch, Kirina Amada, Will van Gelder, Kevin Glover, Eric E. Roden, Eric S. BoydAerobic and Anaerobic Thiosulfate Oxidation by a Cold-Adapted, Subglacial ChemoautotrophApplied and Environmental Microbiology. March 2016, Volume 82, Number 5. DOI: 10.1128/AEM.03398-15.

Tisza A. S. Bell, Bharath Prithiviraj, Brad D. Wahlen, Matthew W. Fields, Brent M. Peyton. A Lipid-Accumulating Alga Maintains Growth in Outdoor, Alkaliphilic Raceway Pond with Mixed Microbial CommunitiesFrontiers in Microbiology. 7 January 2016. DOI: 10.3389/fmicb.2015.01480

Darius Cepauskas, Inga Miliute, Grazina Staniene, Dalia Gelvonauskiene, Vidmantas Stanys, Algirdas J. Jesaitis, Danas Baniulis.Characterization of apple NADPH oxidase genes and their expression associated with oxidative stress in shoot culture in vitro. Plant cell, Tissue and Organ Culture. March 2016, Volume 124, Issue 3, pp 621-633. DOI: 10.1007/s11240-015-0920-2.

A. Criddle, T. Thornburg, I. Kochetkova, M. DePartee and M.P. Taylor.  gD-independent superinfection exclusion of alphaherpesvirusesJournal of Virology. 3 February 2016, doi: 10.1128/JVI.00089-16.

Chris Organ, Mikayla Struble, Aurore Canoville, Vivian de Buffrénil, Michel Laurin.  Macroevolution of genome size in sarcopterygians during the water–land transition.  Comptes Rendus Palevol.  Volume 15, Issues 1–2, January 2016, Pages 65–73.  doi:10.1016/j.crpv.2015.09.003.

James Moberly , Seth D'Imperio, Albert Parker, Brent PeytonMicrobial community signature in Lake Coeur d’Alene: Association of environmental variables and toxic heavy metal phasesApplied Geochemistry. Volume 66, March 2016, Pages 174–183.  doi:10.1016/j.apgeochem.2015.12.013.

Thomas J. O'Shea, Paul M. Cryan, David T.S. Hayman, Raina K. Plowright,  and Daniel G. Streicker.  Multiple mortality events in bats: a global reviewMammal Review.  18 January, 2016.  DOI: 10.1111/mam.12064

 Gerrit J. Schut, Oleg Zadvornyy, Chang-Hao Wu, John W. Peters, Eric S. Boyd, Michael W.W. Adams.  The role of geochemistry and energetics in the evolution of modern respiratory complexes from a proton-reducing ancestor.  Biochimica et Biophysica Acta (BBA) – Bioenergetics.  22 January 2016.  doi:10.1016/j.bbabio.2016.01.010.

Dan W. Siemsen, Erin Dobrinen, Soo Han, Kari Chiocchi, Nicole Meissner, Steve D. Swain Vascular Dysfunction in Pneumocystis-Associated Pulmonary Hypertension Is Related to Endothelin Response and Adrenomedullin ConcentrationThe American Journal of Pathology.  Volume 186, Issue 2, February 2016, Pages 259–269.  doi:10.1016/j.ajpath.2015.10.008.

Andrew G. Ramstead, Amanda Robison, Anne Blackwell, Maria Jerome,Brett Freedman, Kirk J. Lubick, Jodi F. Hedges and Mark A. Jutila. Roles of Toll-Like Receptor 2 (TLR2), TLR4, and MyD88 during Pulmonary Coxiella burnetii Infection. Infection and Immunity.  Volume 84, January 2016

Thomas J. O'Shea, Paul M. Cryan, David T.S. Hayman, Raina K. Plowright, Daniel G. Streicker. Multiple mortality events in bats: a global review. Mammal Review. January 2016. DOI: 10.1111/mam.12064

Paul C. Jordan, Dustin P. Patterson, Kendall N. Saboda, Ethan J. Edwards, Heini M. Miettinen, Gautam Basu, Megan C. Thielges and Trevor Douglas. Self-assembling biomolecular catalysts for hydrogen productionNature Chemistry. 2016. doi:10.1038/nchem.2416. 

2015

Nikki Dellas, Jamie C. Snyder, Michael Dills, Sheena J. Nicolay, Keshia M. Kerchner, Susan K. Brumfield, C. Martin Lawrence, Mark J. YoungStructure-Based Mutagenesis of Sulfolobus Turreted Icosahedral Virus B204 Reveals Essential Residues in the Virion-Associated DNA-Packaging ATPaseJournal of Virology. Volume 90, Number 6. 23 December 2015. DOI: 10.1128/JVI.02435-15

Laura M. Brutscherand Michelle L. FlennikenRNAi and Antiviral Defense in the Honey BeeJournal of Immunology Research. 29 November 2015. Volume 2015, Article ID 941897, 10 pages. DOI: 10.1155/2015/941897.

Timothy Hamerly, Brian Tripet, Louie Wurch, Robert L. Hettich, Mircea Podar, Brian Bothner, Valérie CopiéCharacterization of Fatty Acids in Crenarchaeota by GC-MS and NMRArchaea. 2 December 2015. Volume 2015, Article ID 472726, 9 pages. DOI: 10.115/2015/472726.

Aifen Zhou, Kristina L Hillesland, Zhili He, Wendy Schackwitz, Qichao Tu, Grant M Zane, Qiao Ma, Yuanyuan Qu, David A Stahl, Judy D Wall, Terry C Hazen, Matthew W Fields, Adam P Arkin1, and Jizhong Zhou.  Rapid selective sweep of pre-existing polymorphisms and slow fixation of new mutations in experimental evolution of Desulfovibrio vulgarisThe ISME Journal 9, 2360–2372; doi:10.1038/ismej.2015.45; published online 7 April 2015.

Ryan N Jackson, Airlie J McCoy, Thomas C Terwilliger, Randy J Read, and Blake Wiedenheft.  X-ray structure determination using low-resolution electron microscopy maps for molecular replacementNature Protocols.  10, 1275–1284  (2015).  doi:10.1038/nprot.2015.069.

Ping Zhang, Joy D. Van Nostrand, Zhili He, Romy Chakraborty, Ye Deng, Daniel Curtis, Matthew W. Fields, Terry C. Hazen, Adam P. Arkin, and Jizhong Zhou.  A Slow-Release Substrate Stimulates Groundwater Microbial Communities for Long-Term in Situ Cr(VI) ReductionEnvironmental Science and Technology. April 02, 2015, 49 (21), pp 12922–12931. DOI: 10.1021/acs.est.5b00024.

Katherine R. Amato,Carl J. Yeoman, Gabriela Cerda, Christopher A. Schmitt, Jennifer Danzy Cramer, Margret E. Berg Miller, Andres Gomez, Trudy R. Turner, Brenda A. Wilson, Rebecca M. Stumpf, Karen E. Nelson, Bryan A. White, Rob Knight and Steven R. Leigh.  Variable responses of human and non-human primate gut microbiomes to a Western diet.  Microbiome 2015 3:53.  DOI: 10.1186/s40168-015-0120-7.

Sy Redding, Samuel H. Sternberg, Myles Marshall, Bryan Gibb, Prashant Bhat, Chantal K. Guegler, Blake Wiedenheft, Jennifer A. Doudna, Eric C. Greene Surveillance and Processing of Foreign DNA by the Escherichia coli CRISPR-Cas SystemCellVolume 163, Issue 4, 5 November 2015, Pages 854–865.  doi:10.1016/j.cell.2015.10.003. 

Justin R. Prigge, Teri R. Hoyt, Erin Dobrinen, Mario R. Capecchi, Edward E. Schmidt, Nicole Meissner.  Type I IFNs Act upon Hematopoietic Progenitors To Protect & Maintain Hematopoiesis during Pneumocystis Lung Infection in MiceJournal of Immunology. 2015 Dec 1;195(11):5347-57. doi: 10.4049/jimmunol.1501553.

Peipoch M, Jones R, Valett HM (2015)Spatial Patterns in Biofilm Diversity across Hierarchical Levels of River-Floodplain Landscapes. PLoS ONE 10(12): e0144303. doi:10.1371/journal.pone.0144303

Ruth S. Hindshaw, Tim H.E. Heaton, Eric S. Boyd, Melody R. Lindsay, Edward T. Tipper.  Influence of glaciation on mechanisms of mineral weathering in two high Arctic catchments.  Chemical Geology.  Volume 420, 20 January 2016, Pages 37–50.  doi:10.1016/j.chemgeo.2015.11.004.

Deborah Keil, Brenda Buck, Dirk Goossens, Yuanxin Teng, Mallory Leetham, Lacey Murphy, James Pollard, Margaret Eggers, Brett McLaurin, Russell Gerads, Jamie DeWitt.  Immunotoxicological and neurotoxicological profile of health effects following subacute exposure to geogenic dust from sand dunes at the Nellis Dunes Recreation Area, Las Vegas, NVToxicology and Applied Pharmacology.  Volume 291, 15 January 2016, Pages 1–12.  doi:10.1016/j.taap.2015.11.020

Deborah E. KeilImmunotoxicity of Perfluoroalkylated CompoundsToxicological Effects of Perfluoroalkyl and Polyfluoroalkyl Substances.  pp 239-248.  2015.  10.1007/978-3-319-15518-0_10

Christopher L. Hemme, Qichao Tu, Zhou Shi, Yujia Qin, Weimin Gao, Ye Deng, Joy D. Van Nostrand, Liyou Wu, Zhili He, Patrick S. G. Chain, Susannah G. Tringe, Matthew W. Fields, Edward M. Rubin, James M. Tiedje, Terry C. Hazen, Adam P. Arkin and Jizhong Zhou Comparative metagenomics reveals impact of contaminants on groundwater microbiomes.  Frontiers in Microbiology.   6:1205. doi: 10.3389/fmicb.2015.01205

Daria Vorontsova, Kirill A. Datsenko, Sofia Medvedeva, Joseph Bondy-Denomy, Ekaterina E. Savitskaya, Ksenia Pougach, Maria Logacheva, Blake Wiedenheft, Alan R. Davidson, Konstantin Severinov and Ekaterina Semenova Foreign DNA acquisition by the I-F CRISPR–Cas system requires all components of the interference machineryNucleaic Acids Research. 15 December 2015.  Volume 43, Issue 22, pp 10848-10860. doi: 10.1093/nar/gkv126

Cebula Marcus, Schmidt Edward E., and Arnér Elias S.J.. Antioxidants & Redox Signaling. October 1, 2015, 23(10): 823-853. doi:10.1089/ars.2015.6378.

Luis O’mar Serrano Figueroa , Benjamin Schwarz, Abigail M. Richards. 2015Structural characterization of amphiphilic siderophores produced by a soda lake isolate, Halomonas sp. SL01, reveals cysteine-, phenylalanine- and proline-containing head groupsExtremophiles.  November 2015, Volume 19, Issue 6, pp 1183-1192.  doi: 10.1007/s00792-015-0790-x.

Soley Ruth Gudbergsdottir, Peter Menzel, Anders Krogh, Mark Young, Xu Peng.  2015.  Novel viral genomes identified from six metagenomes reveal wide distribution of archaeal viruses & high viral diversity in terrestrial hot springsEnvironmental Microbiology.  2015 Oct 6. doi: 10.1111/1462-2920.13079.

Ryan Thomas Jones , Jeff Borchert, Rebecca Eisen, Katherine MacMillan, Karen Boegler, Kenneth L. Gage.  2015.  Flea-Associated Bacterial Communities across an Environmental Transect in a Plague-Endemic Region of UgandaPlos.  Published: October 20, 201 Flea-Associated Bacterial Communities across an Environmental Transect in a Plague-Endemic Region of Uganda DOI:10.1371/journal.pone.0141057.

Jacob H. Munson-McGee, Erin K. Field, Mary Bateson, Colleen Rooney, Ramunas Stepanauskas and Mark J. Young, K. E. Wommack, Editor.  Nanoarchaeota, Their Sulfolobales Host, and Nanoarchaeota Virus Distribution across Yellowstone National Park Hot SpringsApplied and Environmental Microbiology.  November 2015 vol. 81 no. 22 7860-7868.  doi: 10.1128/AEM.01539-15.

Joseph Bondy-Denomy, Bianca Garcia, Scott Strum, Mingjian Du, MaryClare F. Rollins, Yurima Hidalgo-Reyes, Blake Wiedenheft, Karen L. Maxwell, and Alan R. Davidson. 2015Multiple mechanisms for CRISPR–Cas inhibition by anti-CRISPR proteins.  Nature. 526, 136–139 (01 October 2015)  doi:10.1038/nature15254.

Chris L. Organ, Lisa Noelle Cooper, and Tobin L. Hieronymus. 2015Macroevolutionary developmental biology: Embryos, fossils, and phylogeniesDevelopmental Dynamics. Volume 244, Issue 10, pages 1184–1192, October 2015.  DOI: 10.1002/dvdy.24318

Philip S. Stewart. 2015.  Prospects for Anti-Biofilm PharmaceuticalsPharmaceuticals.  2015, 8(3), 504-511; doi:10.3390/ph8030504. 

Kyler B. Pallister,  Sara Mason,  Tyler K. Nygaard,  Bin Liu,  Shannon Griffith,  Jennifer Jones,  Susanne Linderman,  Melissa Hughes,  David Erickson,  Jovanka M. Voyich,  Mary F. Davis,  Eric Wilson.  2015.  Bovine CCL28 Mediates Chemotaxis via CCR10 and Demonstrates Direct Antimicrobial Activity against Mastitis Causing BacteriaPlos One.  September 11, 2015.  DOI: 10.1371/journal.pone.0138084. 

Brandy D. Stewart, A. Cristina Cismasu, Kenneth H. Williams, Brent M. Peyton, and Peter S. Nico.  2015.  Reactivity of Uranium and Ferrous Iron with Natural Iron Oxyhydroxides.  Environmental Science and Technology.  2015, 49 (17), pp 10357–10365.  DOI: 10.1021/acs.est.5b02645.

Samuel L. Aitken, M. Jahangir Alam, Mohammed Khaleduzzuman, Seth T. Walk, William L. Musick, Vy P. Pham, Jennifer L. Christensen, Robert L. Atmar, Yang Xie and Kevin W. Garey.  2015.  In the Endemic Setting, Clostridium difficile Ribotype 027 Is Virulent But Not HypervirulentInfection Control & Hospital Epidemiology.  / Volume 36 / Issue 11 / November 2015, pp 1318-1323.  doi:10.1038/srep12666. 

Lisa Selzer, Ravi Kant, Joseph C-Y Wang, Brian Bothner and Adam Zlotnick.  2015.  Hepatitis B Virus Core Protein Phosphorylation Sites Affect Capsid Stability and Transient Exposure of the C-terminal DomainThe Journal Of Biological Chemistry.  2015 Sep 24. doi: 10.1074/jbc.M115.678441.

Tiffanie M. Nelson, Joanna-Lynn C. Borgogna, Rebecca M. Brotman, Jacques Ravel, Seth T. Walk and Carl J. YeomanVaginal biogenic amines: biomarkers of bacterial vaginosis or precursors to vaginal dysbiosis?  Frontiers in Physiology.  29 September 2015 |
http://dx.doi.org/10.3389/fphys.2015.00253

Kara B. De León,  Sagar M. Utturkar, Laura B. Camilleri, Dwayne A. Elias, Adam P. Arkin, Matthew W. Fields, Steven D. Brown, Judy D. Wall. 2015.  Complete Genome Sequence of Pelosinus fermentans JBW45, a Member of a Remarkably Competitive Group of Negativicutes in the Firmicutes Phylum.     Genome Announcements.  September/October 2015   vol. 3  no. 5  e01090-15.  doi: 10.1128/genomeA.01090-15. 

Krishna Rao, Dejan Micic, Mukil Natarajan, Spencer Winters, Mark J. Kiel, Seth T. Walk, Kavitha Santhosh, Jill A. Mogle, Andrzej T. Galecki, William LeBar, Peter D. R. Higgins, Vincent B. Young, and David M. Aronoff.  2015.  Clostridium difficile Ribotype 027: Relationship to Age, Detectability of Toxins A or B in Stool With Rapid Testing, Severe Infection, and Mortality.  Clinical Infectious Diseases.  Volume 61,  Issue 2 Pp.  233-241.  doi: 10.1093/cid/civ254.

Mark D. Kleven, Mensur Dlakić and C. Martin Lawrence. 2015.  Characterization of a Single b-type Heme, FAD, and Metal Binding Sites in the Transmembrane Domain of Six-transmembrane Epithelial Antigen of the Prostate (STEAP) Family ProteinsThe Journal of Biological Chemistry.  2015 Sep 11;290(37):22558-69. doi: 10.1074/jbc.M115.664565.

Igor A. Schepetkin, Andrei I. Khlebnikov, Liliya N. Kirpotina, Mark T. Quinn. 2015Antagonism of human formyl peptide receptor 1 with natural compounds and their synthetic derivatives.  International Immunopharmacology.  2015 Sep 14. pii: S1567-5769(15)30095-3. doi: 10.1016/j.intimp.2015.08.036.

Ryan N Jackson, Airlie J McCoy, Thomas C Terwilliger, Randy J Read, Blake WiedenheftX-ray structure determination using low-resolution electron microscopy maps for molecular replacementNature Protocols.  10, 1275–1284 (2015) doi:10.1038/nprot.2015.069 Published online  30 July 2015.

Guanghui Liu, Wenchao Feng, Dengfeng Li,  Mengyao Liu, Daniel C. Nelson and Benfang LeiThe Mga Regulon but not Deoxyribonuclease Sda1 of Invasive M1T1 Group A Streptococcus Contributes to in vivo Selection of CovRS Mutations and Resistance to Innate Immune Killing Mechanisms. Infection and Immunity.  Accepted manuscript posted online 17 August 2015, doi: 10.1128/IAI.00857-15.

Benjamin Bolduc, Jennifer F Wirth, Aurélien Mazurie and Mark J Young.2015.  Viral assemblage composition in Yellowstone acidic hot springs assessed by network analysis. The ISME Journal (2015) 9, 2162–2177; doi:10.1038/ismej.2015.28; published online 30 June 2015. 

Andres Gomez, Jessica M Rothman, Klara Petrzelkova, Carl J Yeoman, Klara Vlckova, Juan D Umaña, Monica Carr, David Modry, Angelique Todd, Manolito Torralba, Karen E Nelson, Rebecca M Stumpf, Brenda A Wilson, Ran Blekhman, Bryan A White and Steven R Leigh. 2015. Temporal variation selects for diet–microbe co-metabolic traits in the gut of Gorilla sppThe ISME Journal advance online publication, 28 August 2015; doi:10.1038/ismej.2015.146.

Kathleen Boesze-Battaglia,  Lisa P. Walker, Ali Zekavat,  Mensur Dlakić,  Monika Damek Scuron,  Patrik Nygren and  Bruce J. Shenker, S. R. Blanke, Editor.  2015.  The Aggregatibacter actinomycetemcomitans Cytolethal Distending Toxin Active Subunit CdtB Contains a Cholesterol Recognition Sequence Required for Toxin Binding and Subunit Internalization.  Infection and Immunity. October 2015.  vol. 83  no. 10  4042-4055.   doi: 10.1128/IAI.00788-15. 

R. J. VanKempen-Fryling, O. R. Stein, Anne K. Camper.  2015.  Presence and persistence of wastewater pathogen Escherichia coli O157:H7 in hydroponic reactors of treatment wetland speciesWater Science & Technologoy.  Vol 72 No 1 pp 135–140 © IWA Publishing 2015 doi:10.2166/wst.2015.199.

Keith E. Cooksey.  Regulation of the initial events in microalgal triacylglycerol (TAG) synthesis: hypothesesJournal of Applied Phycology.  August 2015, Volume 27, Issue 4, pp 1385-1387.  doi. 10.1007/s10811-014-0461-9.

Elliott P. Barnhart, Marcella A. McClure, Kiki Johnson, Sean Cleveland, Kristopher A. Hunt & Matthew W. Fields.  2015.  Potential Role of Acetyl-CoA Synthetase (acs) and Malate Dehydrogenase (mae) in the Evolution of the Acetate Switch in Bacteria and Archaea.  Scientific Reports 5, Article number: 12498 (2015).  doi:10.1038/srep12498.

Maria Paola Giovannoni, Igor A. Scheptkin, Letizia Crocetti, Giovanna Ciciani, Agostino Cilibrizzi, Gabriella Guerrini, Andrei I. Khlebnikov, Mark T. Quinn, and Claudia Vergelli. Cinnoline derivatives as human neutrophil elastase inhibitors. Journal of Enzyme Inhibition and Medicinal Chemistry. July 2015, Pages 628-639. http://dx.doi.org/10.3109/14756366.2015.1057718.

Sarah E. Mailhiot, Donald L. Zignego, Justin R. Prigge, Ella R. Wardwell, Edward E. Schmidt, Ronald K. June.  2015.  Non-Invasive Quantification of Cartilage Using a Novel In Vivo Bioluminescent Reporter Mouse.  Plos One.  July 7, 2015.  DOI: 10.1371/journal.pone.0130564.

Han-Ching Tseng, Aida Arasteh, Kawaljit Kaur, Anna Kozlowska, Paytsar Topchyan and Anahid Jewett. Differential cytotoxicity but augmented IFN-γ secretion by NK cells after interaction with monocytes from humans, and those from wild type and myeloid-specific COX-2 knockout mice. Frontiers in Immunology. June 2015. http://dx.doi.org/10.3389/fimmu.2015.00259

Gerardo Martin, Raina Plowright, Carla Chen, David Kault, Paul Selleck, Lee F. Skerratt.  2015 Hendra virus survival does not explain spillover patterns and implicates relatively direct transmission routes from flying foxes to horsesJournal of General Virology.  June 2015 96: 1229-1237,  doi:   10.1099/vir.0.000073.

Paul B.G. van Erp, Ryan N. Jackson, Joshua Carter, Sarah M. Golden, Scott Bailey and Blake Wiedenheft. Mechanism of CRISPR-RNA guided recognition of DNA targets in Escherichia coli. Nucleic Acids Research.  (30 September 2015)   43  (17):  8381-8391. doi: 10.1093/nar/gkv793. 

Chris L. Organ, Lisa Noelle Cooper Tobin L. Hieronymus.  2015 Macroevolutionary developmental biology: Embryos, fossils, and phylogenies. Developmental Dynamics. Volume 244, Issue 10,  pages 1184–1192, October 2015. DOI: 10.1002/dvdy.24318. 

Rebecca Hochstein, Daniel Bollschweiler, Harald Engelhardt,  C. Martin Lawrence, and  Mark Young.  2015. Large Tailed Spindle Viruses of Archaea: a New Way of Doing Viral Business.  Journal of Virology.  September 2015   vol. 89  no. 18  9146-9149.  doi: 10.1128/JVI.00612-15. 

Agnieszka Rynda-Apple, Keven M. Robinson and John F. Alcorn. H. L. Andrews-Polymenis, Editor. 2015.  Influenza and Bacterial Superinfection: Illuminating the Immunologic Mechanisms of Disease.  Infection and Immunity.  October 2015   vol. 83  no. 10  3764-3770.   doi: 10.1128/IAI.00298-15.

Paul B.G. van Erp,  Ryan N. Jackson,Joshua Carter, Sarah M. Golden, Scott Bailey and Blake Wiedenheft.  2015.  Mechanism of CRISPR-RNA guided recognition of DNA targets in Escherichia coliNucleic Acids Research.  30 September 2015)   43  (17):  8381-8391.  doi: 10.1093/nar/gkv793.

Inna Rozman Grinberg, Guohua Yin, Ilya Borovok, Margret E. Berg Miller, Carl J. Yeoman, Bareket Dassa, Zhongtang Yu, Itzhak Mizrahi, Harry J. Flint, Edward A. Bayer, Bryan A. White, Raphael Lamed.  2015. Functional phylotyping approach for assessing intraspecific diversity of Ruminococcus albus within the rumen microbiome.  FEMS Microbiology Letters.  2015 Jan;362(3):1-10. doi: 10.1093/femsle/fnu047.

Jacob H. Artz, Spencer N. White, Oleg A. Zadvornyy, Corey J. Fugate, Danny Hicks, George H. Gauss, Matthew C. Posewitz, Eric S. Boyd, and John W. Peters.  2015.  Biochemical and structural properties of a thermostable mercuric ion reductase from Metallosphaera sedula. Frontiers in Bioengineering and Biotechnology. 13 July 2015.  doi: 10.3389/fbioe.2015.00097.

Qian Wang, Dong Qin, Shengzhe Zhang, Lu Wang, Jingxin Li, Christopher Rensing, Timothy R. McDermott, and Gejiao Wang. 2015. Fate of arsenate following arsenite oxidation in Agrobacterium tumefaciens GW4Environmental Microbiology. Volume 17, Issue 6,  pages 1926–1940, June 2015. DOI: 10.1111/1462-2920.12465.

Courtney R. Plumlee, Joshua J. Obar, Sara L. Colpitts, Evan R. Jellison, W. Nicholas Haining, Leo Lefrancois and Kamal M. Khanna. 2015. Early Effector CD8 T Cells Display Plasticity in Populating the Short-Lived Effector and Memory-Precursor Pools Following Bacterial or Viral InfectionScientific Reports.  Epub: 20 July 2015. 12264 (2015).  doi:10.1038/srep12264.

Peter Menzel, Sóley Ruth Gudbergsdóttir, Anne Gunn Rike, Lianbing Lin, Qi Zhang, Patrizia Contursi, Marco Moracci, Jakob K. Kristjansson, Benjamin Bolduc, Sergey Gavrilov, Nikolai Ravin, Andrey Mardanov, Elizaveta Bonch-Osmolovskaya, Mark Young, Anders Krogh, Xu Peng.  Comparative Metagenomics of Eight Geographically Remote Terrestrial Hot Springs.  Microbial Ecology.  August 2015, Volume 70, Issue 2, pp 411-424.  doi: 10.1007/s00248-015-0576-9.

Mark D. Kleven,  Mensur Dlakić and C. Martin Lawrence.  2015Characterization of a Single b-type Heme, FAD, and Metal Binding Sites in the Transmembrane Domain of Six-transmembrane Epithelial Antigen of the Prostate (STEAP) Family ProteinsThe Journal for Biological Chemistry.  September 11, 2015.  290,  22558-22569.  doi: 10.1074/jbc.M115.664565

Aaron D. Schuler, Courtney A. Engles, Dean Y. Maeda, Mark T. Quinn, Liliya N. Kirpotina, Winston N. Wicomb, S. Nicholas Mason, Richard L. Auten, John A. Zebala2015Boronic acid-containing aminopyridine- and aminopyrimidinecarboxamide CXCR1/2 antagonists: Optimization of aqueous solubility and oral bioavailability. Bioorganic & Medicinal Chemistry Letters. Volume 25, Issue 18, 15 September 2015, Pages 3793–3797.  doi:10.1016/j.bmcl.2015.07.090.

Edward E. Schmidt.  2015.  Interplay between cytosolic disulfide reductase systems and the Nrf2/Keap1 pathway. Biochemical Society Transactions.  Aug 03, 2015,  43  (4)  632-638;  DOI: 10.1042/BST20150021.

Katie F. Daughenbaugh, Madison Martin,  Laura M. Brutscher, Ian Cavigli ,  Emma Garcia ,  Matt Lavin and  Michelle L. Flenniken.  Honey Bee Infecting Lake Sinai Viruses.  Viruses. 2015, 7(6), 3285-3309.  doi:10.3390/v7062772.

R. Kratchmarova, L. W. Enquista, M. P. Taylor, M. Sandri-Goldin, Editor.  2015.  Us9-Independent Axonal Sorting and Transport of the Pseudorabies Virus Glycoprotein gM.  June 2015 vol. 89 no. 12 6511-6514.  doi: 10.1128/JVI.00625-15.

Paul BG van Erp, Gary Bloomer, Royce Wilkinson, Blake Wiedenheft.  2015.  The history and market impact of CRISPR RNA-guided nucleases.  Current Opinion in Virology.  Volume 12, June 2015, Pages 85–90.  doi:10.1016/j.coviro.2015.03.011.

Jingxin Li, Qian Wang, Mingshun Li, Birong Yang, Manman Shi, Wei Guo, Timothy R. McDermott, Christopher Rensing, and Gejiao Wang.  2015.  Proteomics and Genetics for Identification of a Bacterial Antimonite Oxidase in Agrobacterium tumefaciens.  Environmental Science & Technology. 2015, 49 (10), pp 5980–5989.   DOI: 10.1021/es506318b.

Zachary W. Stetzner, Dengfeng Li, Wenchao Feng, Mengyao Liu, Guanghui Liu, James Wiley, Benfang Lei.  2015Serotype M3 and M28 Group A Streptococci Have Distinct Capacities to Evade Neutrophil and TNF-α Responses and to Invade Soft Tissues.  Plos One.  June 5, 2015.  DOI: 10.1371/journal.pone.0129417.

Jenna Crowell, James A. Wiley, Richard A. Bessen.  2015. Lesion of the Olfactory Epithelium Accelerates Prion Neuroinvasion and Disease Onset when Prion Replication Is Restricted to Neurons.  Plos One.  March 30, 2015.  DOI: 10.1371/journal.pone.0119863.

Karen M. Kapheim, Vikyath D. Ra, Carl J. Yeoman, Brenda A. Wilson, Bryan A. White, Nigel Goldenfeld, Gene E. Robinson. 2015. Caste-Specific Differences in Hindgut Microbial Communities of Honey Bees (Apis mellifera).  Plos One. April 15, 2015.  DOI: 10.1371/journal.pone.0123911.

Yoon-Suk Kang, Zunji Shi, Brian Bothner, Gejiao Wang and Timothy R. McDermott.  2015 Involvement of the Acr3 and DctA anti-porters in arsenite oxidation in Agrobacterium tumefaciens 5AEnvironmental Microbiology.  Volume 17, Issue 6, pages 1950–1962, June 2015.  DOI: 10.1111/1462-2920.12468.

Daniel Ritter, David Vinson, Elliott Barnhart, Denise M. Akob, Matthew W. Fields, Al B. Cunningham, William Orem, Jennifer C. McIntosh. 2015.  Enhanced microbial coalbed methane generation: A review of research, commercial activity, and remaining challengesInternational Journal of Coal Geology.  Volume 146, 1 July 2015, Pages 28–41.  doi:10.1016/j.coal.2015.04.013.

Igor A. Schepetkin, Svetlana V. Kushnarenko, Gulmira Özek, Liliya N. Kirpotina, Gulzhakhan A. Utegenova, Yuriy A. Kotukhov, Alevtina N. Danilova, Temel Özek, K. Hüsnü Can Başer, and Mark T. Quinn. 2015Inhibition of Human Neutrophil Responses by the Essential Oil of Artemisia kotuchovii and Its ConstituentsJournal of Agriculture and Food Chemistry.  2015, 63 (20), pp 4999–5007.  DOI: 10.1021/acs.jafc.5b01307.  

Michel Laurin, Aurore Canoville, Mikayla Struble, Chris Organ, Vivian de Buffrénil.  2015.  Early genome size increase in urodeles.  Comptes Rendus Palevol.  online 26 March 2015 In Press.  doi:10.1016/j.crpv.2014.12.006.  

Andres Gomez, Klara Petrzelkova, Carl J. Yeoman, Klara Vlckova, Jakub Mrázek, Ingrid Koppova, Franck Carbonero, Alexander Ulanov, David Modry, Angelique Todd, Manolito Torralba, Karen E. Nelson, H. Rex Gaskins, Brenda Wilson, Rebecca M. Stumpf, Bryan A. White and Steven R. Leigh.  2015.  Gut microbiome composition and metabolomic profiles of wild western lowland gorillas (Gorilla gorilla gorilla) reflect host ecology.  Molecular Ecology.  Volume 24, Issue 10, pages 2551–2565, May 2015.  DOI: 10.1111/mec.13181.

Amy C. Graham, Rachel M. Temple and Joshua J. Obar.  2015.  Mast cells and influenza A virus: association with allergic responses and beyondFrontiers in Immunology.  2015 May 18;6:238.  doi: 10.3389/fimmu.2015.00238.  

Philip S. Stewart, Michael J. Franklin, Kerry S. Williamson, James P. Folsom, Laura Boegli and Garth A. James.  2015.  Contribution of Stress Responses to Antibiotic Tolerance in Pseudomonas aeruginosa BiofilmsAntimicrobial Agents and Chemotherapy.  July 2015 vol. 59 no. 7 3838-3847.  doi: 10.1128/AAC.00433-15.  

Matthew R. Urschela,, Michael D. Kubo, Tori M. Hoehler, John W. Peters, and Eric S. Boyd, A.M. Spormann, Editor. 2015 Carbon Source Preference in Chemosynthetic Hot Spring Communities.  Applied and Environmental Microbiology.  June 2015 vol. 81 no. 11 3834-3847.  doi: 10.1128/AEM.00511-15.

Dean Y. Maeda, , , Angela M. Peck, Aaron D. Schuler, Mark T. Quinn, Liliya N. Kirpotina, Winston N. Wicomb, Richard L. Auten, Rambabu Gundla, John A. Zebala.  2015Boronic acid-containing CXCR1/2 antagonists: Optimization of metabolic stability, in vivo evaluation, and a proposed receptor binding model. Bioorganic &Medicinal Chemistry Letters.  Volume 25, Issue 11, 1 June 2015, Pages 2280–2284.  doi:10.1016/j.bmcl.2015.04.041.

Egan J Lohman, Robert D Gardner, Todd Pedersen, Brent M Peyton, Keith E Cooksey and Robin Gerlach.   Optimized inorganic carbon regime for enhanced growth and lipid accumulation in Chlorella vulgaris.  Biotechnology for Biofuels.  2015 Jun 11;8:82.  doi: 10.1186/s13068-015-0265-4.

Eric S. Boyd.  2015.  Archaea on the moveEnvironmental Microbiology Reports.  Volume 7, Issue 3, June 2015, Pages 385–387.  DOI: 10.1111/1758-2229.12281.

Laura M Brutscher, Katie F Daughenbaugh, Michelle L Flenniken.  2015 Antiviral defense mechanisms in honey bees.  Current Opinion in Insect Science.   Volume 10, August 2015, Pages 71–82.  doi:10.1016/j.cois.2015.04.016.

Igor A. Schepetkin, Liliya N. Kirpotina, Deepa Hammaker, Irina Kochetkova, Andrei I. Khlebnikov, Sergey A. Lyakhov, Gary S. Firestein, and Mark T. Quinn.  2015 Anti-Inflammatory Effects and Joint Protection in Collagen-Induced Arthritis after Treatment with IQ-1S, a Selective c-Jun N-Terminal Kinase Inhibitor.  The Journal of Pharmacology and Experimental Therapeutics.  June 2015 vol. 353 no. 3 505-516.  doi: 10.1124/jpet.114.220251.

Ryan N. Jackson, Blake Wiedenheft.  2015.  A Conserved Structural Chassis for Mounting Versatile CRISPR RNA-Guided Immune ResponsesMolecular Cell.  Volume 58, Issue 5, 4 June 2015, Pages 722–728. doi:10.1016/j.molcel.2015.05.023.   

Liu M, Feng W, Zhu H, Lei. B. 2015. A Neutralizing Monoclonal IgG1 Antibody of Platelet-Activating Factor Acetylhydrolase SsE Protects Mice against Lethal Subcutaneous Group A Streptococcus Infection. Infect Immunity. 2015 Oct; Vol. 83(10) :2796-805. doi: 10.1128/IAI.00073-15. 

R. Kratchmarov, L. W. Enquist and M. P. Taylor. 2015. Us9-Independent Axonal Sorting and Transport of the Pseudorabies Virus Glycoprotein gM. Journal of Virology. June 2015; vol. 89 no. 12 6511-6514.

Igor A. Schepetkin, Liliya N. Kirpotina, Deepa Hammaker, Irina Kochetkova, Andrei I. Khlebnikov, Sergey A. Lyakhov, Gary S. Firestein, and Mark T. Quinn. 2015. Anti-Inflammatory Effects and Joint Protection in Collagen-Induced Arthritis after Treatment with IQ-1S, a Selective c-Jun N-Terminal Kinase Inhibitor. The Journal of Pharmacology and Experimental Therapeutics, June 2015; 353(3):505-16. doi: 10.1124/jpet. 114.220251. 

Matthew P. Taylor, Lynn W. Enquist. 2015. Axonal Spread of Neuroinvasive Viral Infections. Trends in Mirobiology, May 2015; Volume 23 , Issue 5 , 283 - 288.

J. Telling, E. S. Boyd, N. Bone, E. L. Jones, M. Tranter, J. W. MacFarlane, P. G. Martin, J. L. Wadham, G. Lamarche-Gagnon, M. L. Skidmore, T. L. Hamilton, E. Hill, M. Jackson & D. A. Hodgson. Rock comminution as a source of hydrogen for subglacial ecosystems. Nature Geoscience.February 2015. doi:10.1038/ngeo2533.

Katherine R. Amato, Steven R. Leigh, Angela Kent, Roderick I. Mackie, Carl J. Yeoman, Rebecca M. Stumpf, Brenda A. Wilson, Karen E. Nelson, Bryan A. White, Paul A. Garber. The Gut Microbiota Appears to Compensate for Seasonal Diet Variation in the Wild Black Howler Monkey (Alouatta pigra).  Microbial Ecology, February 2015, Volume 69(2): 434-443. doi: 10.1007/s00248-014-0554-7. Epub 2014 Dec 19.

Alayna K. Caffrey, Margaret M. Lehmann, Julianne M. Zickovich, Vanessa Espinosa, Kelly M. Shepardson, Christopher P. Watschke, Kimberly M. Hilmer, Arsa Thammahong, Bridget M. Barker, Amariliz Rivera, Robert A. Cramer, Joshua J. Obar.  IL-1α Signaling Is Critical for Leukocyte Recruitment after Pulmonary Aspergillus fumigatus ChallengePLoS Pathogens, January 2015, 28;11(1):e1004625. doi: 10.1371/journal.ppat.1004625. eCollection 2015 Jan.

Maureen Kesaano, Robert D. Gardner, Karen Moll, Ellen Lauchnor, Robin Gerlach, Brent M. Peyton, Ronald C. Sims. 2014. Dissolved inorganic carbon enhanced growth, nutrient uptake, and lipid accumulation in wastewater grown microalgal biofilmsBioresource Technology, March 2015, 180: 7-15; doi:10.1016/j.biortech.2014.12.082.

Michael E. Kurczy, Zheng-Jiang Zhu, Julijana Ivanisevic, Adam M. Schuyler, Kush Lalwani, Antonio F. Santidrian, John M. David, Anand Giddabasappa, Amanda J. Roberts, Hernando J. Olivos, Peter J. O’Brien, Lauren Franco, Matthew W. Fields, Liliana P. Paris, Martin Friedlander, Caroline H. Johnson, Adrian A. Epstein, Howard E. Gendelman, Malcolm R. Wood, Brunhilde H. Felding, Gary J. Patti, Mary E. Spilker & Gary Siuzdak. Comprehensive bioimaging with fluorinated nanoparticles using breathable liquids. Nature Communications, January 2015, 6: 5998; doi:10.1038/ncomms6998.

Jodi F. Hedges, Angela M Mitchell, Kerri Jones, Emily Kimmel, Andrew G Ramstead, Deann T Snyder, Mark A. Jutila. 2015. Amphotericin B stimulates γδ T and NK cells, and enhances protection from Salmonella infection. Innate Immunity, January 2015; doi:10.1177/1753425914567692. (Epub ahead of print)

Sofi Eriksson, Justin R. Prigge, Emily Talago, Elias S.J. Arner and Edward E. Schmidt. 2015. Dietary methionine can sustain cytosolic redox homeostasis in the mouse liver. Nature Communications, March 2015; doi:10.1038/ncomms7479.

Giovanna Leoni, Jeannie Gripentrog, Connie Lord, Marcia Riesselman, Ronen Sumagin, Charles A. Parkos, Asma Nusrat and Algirdas J. Jesaitis. 2014. Human neutrophil formyl peptide receptor phosphorylation and the mucosal inflammatory response. Journal of Leukocyte Biology, January 2015, 97:87-101; doi:10.1189/jlb.4A0314-153R.

2014

Kristen A. Brileya, Laura B. Camilleri, Grant m. Zane, Judy D. Wall and Matthew Fields.  2015. Biofilm growth mode promotes maximum carrying capacity and community stability during product inhibition syntrophy. Frontiers in Microbiology, December 2014, 5: 693, doi: 10.3389/fmicb.2014.00693

Keith E. Cooksey. 2014. Regulation of the initial events in microalgal triacylglycerol (TAG) synthesis: hypotheses. Journal of Applied Phycology, December 2014, vol. 26 no. 6, doi 10.10007/s10811-014-0461-9. 

Raina K. Plowright, Peggy Eby, Peter J. Hudson, Ina L. Smith, David Westcott, Wayne L. Bryden, Deborah Middleton, Peter A. Reid,Rosemary A. McFarlane, Gerardo Martin, Gary M. Tabor, Lee F. Skerratt, Dale L.Anderson, Gary Crameri, David Quammen, David Jordan, Paul Freeman, Lin-Fa Wang, Jonathan H. Epstein, Glenn A. Marsh, Nina Y. Kung, Hamish McCallum. 2014. Ecological dynamics of emerging bat virus spillover

Dawoon Chung, Bridget M. Barker, Charles C. Carey, Brittney Merriman, Ernst R. Werner, Beatrix E. Lechner,  Sourabh Dhingra, Chao Cheng, Wenjie Xu, Sara J. Blosser, Kengo Morohashi, Aurélien Mazurie, Thomas K. Mitchell, Hubertus Haas, Aaron P. Mitchell, Robert A. Cramer. 2014. ChIP-seq and In Vivo Transcriptome Analyses of the Aspergillus fumigatus SREBP SrbA Reveals a New Regulator of the Fungal Hypoxia Response and Virulence. PLOS Pathogens. doi: 10.1371/journal.ppat.1004487.  Published 06 Nov 2014.

Kezia R. Manlove, E. Frances Cassirer, Paul C. Cross, Raina K. Plowright, Peter J. Hudson. 2014. Cost and benefits of group living with disease: a case study of pneumonia in bighorn lambs (Ovis canadensis). Proceeding of the Royal Society B: Biological Sciences. 2014 281 20142331; doi: 10.1098/rspb.2014.2331. Published 5 November 2014.

Maeda, D.Y., Peck, A.M., Schuler, A.D., Quinn, M.T., Kirpotina, L.N., Wicomb, W.N., Fan, G.H., and Zebala, J.A. (2014) Discovery of 2-[5-(4-Fluoro-phenylcarbamoyl)-pyridin-2-ylsulfanylmethyl]-phenylboronic acid (SX-517): A Non-Competitive Boronic Acid Antagonist of CXCR1 and CXCR2J. Med. Chem., In Press.

Deann T. Snyder, Amanda Robison, Sharon Kemoli, Emily Kimmel, Jeff Holderness, Mark A. Jutila, and Jodi F. Hedges. 2014. Oral delivery of oligomeric procyanidins in Apple Poly® enhances type I IFN responses in vivo. Journal of Leukocyte Biology. DOI: 10.1189/jlb.0513296

 Schepetkin, I.A., Kirpotine, L.N., Khlebnikov, A.I., Cheng, N., Ye, R.D. and Quinn, M.T. 2014. Antagonism of Human Formyl Peptide Receptor 1 (FPR1) by Chromones and Related Isoflavones. Biochemical Pharmacology, in press.

Eric S. Boyd, Trinity L. Hamilton, Jeff R. Havig, Mark L. Skidmore and Everett L. Shock. 2014. Chemolithotrophic Primary Production in a Subglacial Ecosystem. Applied Environmental Microbiology October 2014 80:6146-6153; published ahead of print 1 August 2014, doi: 10.1128/AEM.01956-14

Ryan N. Jackson, Sarah M. Golden, Paul B.G. van Erp, Joshua Carter, Edze r. Westra, Stan J. J. Brouns, John van der Oost, Thomas C. Terwilliger, Randy J. Read and Blake Wiedenheft. 2014. Crystal structure of the CRISPR RNA-guided surveillance complex form Escherichia coli. Science 19 September 2014; 1473-1479. Publish online 7 August 2014. doi: 10.1126/science.1256328.

Caralyn E. Flack, Oliwia W. Zurek, Delisha D. Meishery, Kyler B. Pallister, Cheryl L. Malone, Alexander R. Horswill, and Jovanka M. Voyich. 2014. Differential regulation of staphylococcal virulence by the sensor kinase SaeS in response to neutrophil-derived stimuli. Proceedings of the National Academy of Sciences. doi: 10.1073/pnas.1322125111

Eric S. Boyd, Gerrit J. Schut, Michael W.W. Adams and John Peters. 2014. Hydrogen Metabolism and the Evolution of Biological Respiration. Microbe "Feature Article" 9:361.

Julianne M. Zickovich, Susan I. Meyer, Hideo Yagita, Joshua J. Obar. 2014. Agonistic Anti-CD40 Enhances the CD8+ T Cell Response during Vesicular Stomatitis Virus Infection. PLOS ONE 10.1371.

Zhu H, Li D, Liu M, Copié V and Lei B. Non-heme-binding domains and segments of the Staphylococcus aureus IsdB protein critically contribute to the kinetics and equilibrium of heme acquisition from methemoglobin. PLoS One. 2014 Jun 24;9(6):e100744. doi: 10.1371/journal.pone.0100744. eCollection 2014.

Fonner BA, Tripet BP, Eilers BJ, Stanisich J, Sullivan-Springhetti RK, Moore R, Liu M. and Lei B, Copié V. Solution structure and molecular determinants of hemoglobin binding of the first NEAT domain of IsdB in Staphylococcus aureus. Biochemistry. 2014 Jun 24;53(24):3922-33. doi: 10.1021/bi5005188. Epub 2014 Jun 11.

Li J, Liu G, Feng W, Zhou Y, Liu M, Wiley JA and Lei B. Neutrophils select hypervirulent CovRS mutants of M1T1 group A Streptococcus during subcutaneous infection of mice. Infect Immun. 2014 Apr; 82(4):1579-90. doi: 10.1128/IAI.01458-13. Epub 2014 Jan 22.

Boyd, E.S., K. Thomas, Y. Dai, J.M. Boyd, and F.W. Outten.  2014. The interplay between oxygen and Fe-S cluster biogenesis: Insights from the Suf pathway.  Biochem. 53:5834–5847. 10.1021/bi500488r.

Boyd*, E.S., G. Schut, M.W.W. Adams, and J.W. Peters.  2014. Hydrogen metabolism and the evolution of respiration.  Microbe.  9:361-367. *Corresponding author.

Jia, J., C.L. Zhang, W. Xie, F. Li, J. Wang, S. Wang, H. Dong, W. Li, and E.S. Boyd*.. 2014. Differential temperature and pH controls on the abundance and composition of H-GDGTs in terrestrial hot springs.  Org. Geochem.  75: 109–121.  doi: 10.1016/j.orggeochem.2014.06.009.  *co-corresponding author.

Alsop, E.A., E.S. Boyd, and J.A. Raymond.  2014. Geochemical constraints on biological evolution: Merging metagenomics and geochemistry to understand how environment shapes biodiversity.  BMC Ecology.  14:16.  doi:10.1186/1472-6785-14-16.

Schepetkin, I.A., Khlebnikov, A.I., Giovannoni, M.P., Kirpotina, L.N., Cilibrizzi, A., and Quinn, M.T. (2014) Development of Small Molecule Non-peptide Formyl Peptide Receptor (FPR) Ligands and Molecular Modeling of Their Recognition. Curr. Med. Chem., 21: 1478-504.

Munnamalai, V., Weaver, C.J., Weisheit, C.E., Venkatraman, P., Agim, Z.S., Quinn, M.T. and Suter, D.M. (2014) Bidirectional interactions between NOX2-type NADPH oxidase and the F-actin cytoskeleton in neuronal growth cones. J. Neurochem. 130: 526-540.

Yu, P., Han, W., Villar, V.A.M., Yu, Y., Lu, Q., Lee, H., Li, F., Quinn, M.T., Gildea, J.J., Felder, R.A., and Jose, P.A. (2014) Unique role of NADPH oxidase 5 in oxidative stress in human renal proximal tubule cells.Redox Biol. 2: 570-579.

Marcia Riesselman, Algirdas J. Jesaitis. 2014. Affinity purification and reconstitution of human phagocyte flavocytochrome B for detection of conformational dynamics in the membrane. Methods Molecular Biology: Neutrophil Methods and Protocols, vol. 1124, 2014, pp 413-426.

Darius Cepauskas, Inga Miliute, Grazina Staniene, Dalia Gelvonauskiene, Vidmantas Stanys, Algirdas J. Jesaitis, Danas Baniulis.Characterization of apple NADPH oxidase genes and their expression associated with oxidative stress in shoot culture in vitro. Plant cell, Tissue and Organ Culture. March 2016, Volume 124, Issue 3, pp 621-633. DOI: 10.1007/s11240-015-0920-2.

Tisza A. S. Bell, Bharath Prithiviraj, Brad D. Wahlen, Matthew W. Fields, Brent M. Peyton. A Lipid-Accumulating Alga Maintains Growth in Outdoor, Alkaliphilic Raceway Pond with Mixed Microbial Communities. Frontiers in Microbiology. 7 January 2016. DOI: 10.3389/fmicb.2015.01480

Zoë R. Harrold, Mark L. SkidmoreTrinity L. HamiltonLibby Desch,Kirina AmadaWill van GelderKevin GloverEric E. Roden,Eric S. Boyd.Aerobic and Anaerobic Thiosulfate Oxidation by a Cold-Adapted, Subglacial Chemoautotroph. Applied and Environmental Microbiology. March 2016, Volume 82, Number 5. DOI: 10.1128/AEM.03398-15.